Difference between revisions of "Automated Alignment of Ontologies"
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* Protege Plugin: [http://cs.uga.edu/~uthayasa/Optima/rel/edu.uga.cs.optima.tar.gz Optima Plugin 3.0] [http://cs.uga.edu/~uthayasa/Optima/ReadMe ReadMe] | * Protege Plugin: [http://cs.uga.edu/~uthayasa/Optima/rel/edu.uga.cs.optima.tar.gz Optima Plugin 3.0] [http://cs.uga.edu/~uthayasa/Optima/ReadMe ReadMe] | ||
* API: [http://cs.uga.edu/~uthayasa/Optima/rel/optima.jar Optima API 3.0] [http://cs.uga.edu/~uthayasa/Optima/OptimaApiDemo.java ReadMe]--> | * API: [http://cs.uga.edu/~uthayasa/Optima/rel/optima.jar Optima API 3.0] [http://cs.uga.edu/~uthayasa/Optima/OptimaApiDemo.java ReadMe]--> | ||
− | * API: [http://cs.uga.edu/~uthayasa/Optima/rel/Optima45.zip Source Optima API 4.5] | + | * API: [http://cs.uga.edu/~uthayasa/Optima/rel/Optima45.zip Source Optima+ API 4.5] |
** Includes three JAVA projects | ** Includes three JAVA projects | ||
*** Graph: Builds graph from owl/rdf ontologies. | *** Graph: Builds graph from owl/rdf ontologies. | ||
− | *** OntoSim: | + | *** OntoSim: Similarity library for ontology concepts |
− | *** Optima: The ontology alignment tool - Optima+ | + | *** Optima+: The ontology alignment tool - Optima+ |
− | * Sample Code: [http://cs.uga.edu/~uthayasa/Optima/rel/TestOptima.zip Sample JAVA project using Optima API 4.5] | + | * Sample Code: [http://cs.uga.edu/~uthayasa/Optima/rel/TestOptima.zip Sample JAVA project using Optima+ API 4.5] |
− | * | + | * Optima+ Binary: [http://cs.uga.edu/~uthayasa/Optima/rel/optima+.zip binary] |
− | ** | + | ** unzip the binary |
− | * Documentation: [http://cs.uga.edu/~uthayasa/Optima/ | + | ** go to the unzipped directory |
− | <!-- * Library Files: [http://cs.uga.edu/~uthayasa/Optima/lib.txt Java libraries used in Optima] --> | + | ** run optima.jar: |
+ | ** align ontologies from web: <br/><code> java -jar optima.jar <br/> -s http://oaei.ontologymatching.org/2011/benchmarks/101/onto.rdf <br/> -t http://oaei.ontologymatching.org/2011/benchmarks/252/onto.rdf <br/>-o output252.rdf --sage </code> | ||
+ | ** align ontologies from file system: <br/> <code> java -jar optima.jar -s file:/D:/benchmarks/101/onto.rdf -t file:/D:/benchmarks/252/onto.rdf -o output252.rdf --sage </code> | ||
+ | ** To see the help message: <br/><code>java -jar optima.jar</code><br/><code><br/>usage: optima<br/>-a,--anon disable modeling anonymous nodes <br/>-b,--sage enable SAGE (Space Alternative Generalized EM) <br/>-d,--debug print debugging information <br/>-h,--help print this message <br/>-i <iterations> # of iterations <br/>-o,--out <file> output file <br/>-property <file> property file <br/>-q,--quiet be extra quiet <br/>-s,--source <uri> source ontology <br/>-S <samples> # of samples <br/>-t,--target <uri> target ontology <br/>-v,--version print the version information and exit </code> | ||
+ | * Documentation: [http://cs.uga.edu/~uthayasa/Optima/rel/doc/ JAVA Doc] | ||
+ | * A Protégé plug-in version and a stand-alone graphical version are available on request. | ||
+ | |||
+ | <!--* SEALS package: [http://cs.uga.edu/~uthayasa/Optima/rel/optima_plus_seals.zip Optima+ SEALS release for OAEI 2012] | ||
+ | ** How to run a seals package: [http://oaei.ontologymatching.org/2011/tutorial/tutorialv2.pdf SEALS tutorial] | ||
+ | * Library Files: [http://cs.uga.edu/~uthayasa/Optima/lib.txt Java libraries used in Optima] --> | ||
}} | }} | ||
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+ | * [http://thinc.cs.uga.edu/thinclabwiki/index.php/Modeling_Complex_Concepts Biomedical Domain Benchmark for Complex Concepts] | ||
+ | * [http://thinc.cs.uga.edu/thinclabwiki/index.php/Biomedical_Domain_Benchmark Biomedical Domain Benchmark] | ||
+ | * [http://thinc.cs.uga.edu/thinclabwiki/index.php/Distributed_Alignment_of_Ontologies Distributed Alignment of Ontologies] | ||
* [http://oaei.ontologymatching.org/ Ontology Alignment Evaluation Initiative (OAEI)] | * [http://oaei.ontologymatching.org/ Ontology Alignment Evaluation Initiative (OAEI)] | ||
* [http://www.ontologymatching.org/ Ontology Matching] | * [http://www.ontologymatching.org/ Ontology Matching] |
Latest revision as of 19:07, 4 April 2021
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